SE3550453

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6671
  • Mimulus guttatus
  • SE3550453
  • PIF/harbinger
  • To2
  • scaffold_14:6236544-6236785
  • TAA
  • AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CCAAAATA    -  GCC   ACAAGATTAAATAATCTAATGAAATCCAATTATATTATTGAACCTTCGATGATCCAATAAAAAAACATGCCTAGAAGGCAAGATAA
  AGGCCTCGTTTGGTTG        AGAT TA   AAT                                                                                      
  ||||||||||||||||        |||| ||   |||                                                                                      G
  TCCGGAGCAAACCAAC        TTTA TC   GGT                                                                                      
AA                -----CCC    A  ---   ACTAATTGATTTATTATCCCGAAACAAACTACAAACCATAGGGGTTATTGAACGGCCCCGTTGGCCGTTTATAATATAATAGTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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