Plant MITE

SE3550455

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6673
Mimulus guttatus
SE3550455
PIF/harbinger
To2
scaffold_12:3746565-3746815
TTA
AGGCCTCGTTTGGTTGCCAAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                CCA    CACATTAACCAA   AA   T  ATAATCTAATGAAAACCAATTATTTTATCGGATCCCGGGACGTCCAACTAAAAACTAACTAAAAGACAAGATAAGGCAAGATA
  AGGCCTCGTTTGGTTG   AGAT            GAT  GAT AA                                                                                   
  ||||||||||||||||   ||||            |||  ||| ||                                                                                   A
  TCCGGAGCAAACCAAC   TCTA            GGT  AAT AA                                                                                   
AT                CCC    ---------ATC   --   -  TTGATTTATTATCCTGAAACAAACTACAAACCATATGGGTTATGGAACGGCCCAGCTGGGCGTTGAAAAATACAAGAGCACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550455

TTAGGCCTCGTTTGGTTGCCAAGATCACATTAACCAAGATAAGATTAAATAATCTAATGAAAACCAATTATTTTATCGGATCCCGGGACGTCCAACTAAAAACTAACTAAAAGACAAGATAAGGCAAGATAAGCCACGAGAACATAAAAAGTTGCGGGTCGACCCGGCAAGGTATTGGGTATACCAAACATCAAACAAAGTCCTATTATTTAGTTAATAATGGCTAATCTCCCCAACCAAACGAGGCCTTA

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