SE3520456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6674
  • Mimulus guttatus
  • SE3520456
  • Mutator
  • M25
  • scaffold_12:5960641-5961107
  • TAATTAAAA
  • TAATTA

Secondary structure and sequence

TSD    TIR
5'



3'
         AAAGG  C                  AAA             A       A       AAAACATTC        CTC           --AA      -   --AAAA      TATCCAAGTCACTCAAAATTCATTATTTTTGTACATGAATAATCATAAAAAATGAGTTCCGTTTTATTTAATATTTATTCAATTGCATTAAGCATTTTTAATTATTCAAATTCATATGA
   TAATTA     GG GTGCTAAATCCTACATTA   TTTACTAAATCAC CACATAA TTAAAAA         TCTCTCTG   AAATTTTCTCT    CTTCTC TCT      TGATTT                                                                                                                       
   ||||||     || ||||||||||||||||||   ||||||||||||| ||||||| |||||||         ||||||||   |||||||||||    |||||| |||      ||||||                                                                                                                        
   ATTAAT     CT TACGATTTAGGGTGTGAT   AAATGGTTTAGTG GTGTATT AATTTTT         AGAGAGAT   TTTAGAAGAGA    GAAGGG AGG      AAAAAG                                                                                                                       
AAA      ---GA  T                  -AA             C       -       ---ATAAAT        ---           AGAA      T   AAGAAG      GGATTACAAAAGTGTTTTAGTGTGTGATTTTTGTAGGAATCGTAAGGTTCAAGCTTAAACTGTTTTTAGAAGTGTAAAGTTTGATTTTATTTCAACCTTAAACTCCCTTTTTTAGCTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End