SE3520457

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6675
  • Mimulus guttatus
  • SE3520457
  • Mutator
  • M9
  • scaffold_8:19727645-19727983
  • GTGATAGAT
  • GTGATAGATTGGGAAAAATACAGTTTTCATCCCTCAAGTTTGCACTGATTTGCACACTTGGTCCCTCATGTTCACAAAAAAAAACACATTTGGTCCCTCATGTTTCAAAAATTAAACACTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
    A  GAT        A              C                  G  CAC                       AAA                         A    A         AGTC              T        ACTAA    ATCAACT T   CCCA
 GTG TA   TGGGAAAA TACAGTTTTCATCC TCAAGTTTGCACTGATTT CA   TTGGTCCCTCATGTTCACAAAAA   ACACATTTGGTCCCTCATGTTTCAA AATT AACACTTTT    ATTTCCGTTAATTT CCGTTAGT     CGGA       G GTA    
 ||| ||   |||||||| |||||||||||||| |||||||||||||||||| ||   |||||||||||||||||||||||   ||||||||||||||||||||||||| |||| |||||||||    |||||||||||||| ||||||||     ||||       | |||     
 TAC AT   GCCCTTTT ATGTCAAAAGTAGG AGTTCAAACGTGACTAAA GT   AACCAGGGAGTACAAGTGTTTTT   TGTGTAAACCAGGGAGTACAAAGTT TTAA TTGTGAAAA    TAAAGGCAGTTAAA GGCAATCA     GCCT       C CGT    
T   -  AGT        A              T                  -  ATA                       ---                         A    A         -AAA              T        -----    ATCATTT -   CACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End