SE3520458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6676
  • Mimulus guttatus
  • SE3520458
  • Mutator
  • M47
  • scaffold_5:18096248-18096791
  • ACAAATTTA
  • AAATTTAGGGTAAATTACGAAAATCCCGATGAACTTAGGCTAAATTACAAAAATACCC

Secondary structure and sequence

TSD    TIR
5'



3'
AC      -A                T   GA                  C     ----     TTACT                 A   A  A        T   A   G     AA  C  C    A              A   C     -GAG  G  A  T     ---CT     ATACTG     A - C                         T TT   A     G       A      GGGG   TCTATACGGAATATTTATTCTTCT
  AAATTT  GGGTAAATTACGAAAA CCC  TGAACTTAGGCTAAATTA AAAAA    TACCC     TATCCGTAATTATCAAA TCC CC ACGTTTGT TTT TCT ACACC  CC CC TATG TGTGATTTTTCATG AAT TTTTT    TC AG GG TATTT     GAAAA      ATTCT C C TGCAGATGTGACATTTCTTTATGCT C  TTT AAGAC AAGATTA CCTTAG    TCC                        
  ||||||  |||||||||||||||| |||  |||||||||||||||||| |||||    |||||     ||||||||||||||||| ||| || |||||||| ||| ||| |||||  || || |||| |||||||||||||| ||| |||||    || || || |||||     |||||      ||||| | | ||||||||||||||||||||||||| |  ||| ||||| ||||||| ||||||    |||                         
  TTTAAA  CCTATTTAATGCTTTT GGG  ACTTGAATCCGATTTAAT TTTTT    GTGGG     ATAGGCATTAATGGTTT GGG GG TGTAAACA AGG AGA TGTGG  GG GG ATGC ACGCTAAAAAGTAC TTA AAAAA    AG TC CT ATAAA     CTTTT      TAAGA G G ACGTCTGCACTGTAAAGAAATACGA G  AAA TTCTG TTTTAAT GGGATT    TGA                        
 A      CA                T   GA                  A     TTGC     --TAC                 G   -  C        T   C   A     CC  A  A    C              C   A     AATA  G  A  T     ACGCT     -CCAAA     A T A                         T TC   C     -       -      ---A   TTTTTCGACACTTACACAATGAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End