SE3520460

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6678
  • Mimulus guttatus
  • SE3520460
  • Mutator
  • M8
  • scaffold_6:15044553-15044916
  • CTTATTAAA
  • TTATTAAAGGGCAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
C   T   A        TACGATT               GC                   TC   C                          CTCAACTATGTATTTA    ACGAAAAGACCCCTCCAGAGGTAAATTTAAAGATGTTAATTTGGTAAAACCGGACCAAAATTTCGGTACGCCAACATTTCA
 TTA TAA GGGCAAAT       TACGGCCACCCCTGA  TATGGTCAAATTACGAAAA  CCC TCTTGTTTGGGTAATTACAGCCACCT                TCTT                                                                                 
 ||| ||| ||||||||       |||||||||||||||  |||||||||||||||||||  ||| ||||||||||||||||||||||||||                ||||                                                                                 T
 AAT ATT CCCGTTTA       ATGCCGGTGGGGACT  ATACCAGTTTAATGCTTTT  GGG AGAACAAACCCATTAATGTCGGTGGG                GGGG                                                                                 
A   T   C        -------               AC                   TT   A                          ----------------    AGGAAAATTTATAAAAATGCATTTTAAATACATTAAACCAATAAATGGCTTGGTTTAGCATATAAAACAAGCGATTTGCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End