SE3530461

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6679
  • Mimulus guttatus
  • SE3530461
  • hAT
  • Hat11
  • scaffold_2:11835502-11836214
  • GAAATCGG
  • GAAATCGGATGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                  C   -    ATA    G  AA            -    AAAAAAAAATCATTTTTTTTCGAAAGTAAAAAATGGATTCCGATTTCCGTTCCAAAAACATTGGAATGCAAAAATTCATTCCGATATCGGAATGCCTCGGAATCGGCGGAATTTCAGAAATTTCGGAAATTACATTAGTTTATAATCTCTTGTTCCAAATTTGGATATAATGGAAATAAATTTTCGGAATATTTTTCTGTCCTTTTTGAAATTTTGCAGGAAAATCCAAAAGAAAGTTCGTCAAAGCGCAATAAATTAAAATACATGTAGGAACAACAAATTGAAATATAAATTTTCTTATAAGGAAAA
             GAAAT GGA TGGA   GATC GA  TGGTTTTTTCGG AAAA                                                                                                                                                                                                                                                                                                                     
             ||||| ||| ||||   |||| ||  |||||||||||| ||||                                                                                                                                                                                                                                                                                                                     A
             CTTTA CCT ACCT   AAGG TT  AAGGCAGTTAAG CTAT                                                                                                                                                                                                                                                                                                                     
GATAAATCCCCAC     A   T    -CA    C  --            G    TTTTTTATAGGCTTAAACTTTGGTATAAAAAGTAAGGCTAAAAGCTTCAAGGCTAAAGGCTAAAAAGACTTAAATAAACCTTGCCTTAACCTTACCATATATTTTAATGGCTTTTAAGGCTAAAGACTAGGCTAAAACCAAGGCTTATAAAGATACTAAAAAACTTTATATATTATATTAAAATACTATATAAAACATTAATGTATTATATTGACTACAATATAAAATTTACATTTTATATTTATTGTTTCCCAGTTCATCTAATTTTGGAAGCTTTTCTAATTAACCATATACTTTGAAATACAACGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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