SE3520463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6681
  • Mimulus guttatus
  • SE3520463
  • Mutator
  • M8
  • scaffold_14:13895757-13896228
  • TTATTAAAA
  • AAGGGTAAATTACAACGACCCCTGAAGTATGGTCAAATTACAAAAAACCCCCTCTTGTTTGGGTAATTACAACCACCCCTCAACTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTAA                -      -   A  A       A   CA         C                   A C    C       -CAAAACTA   A   G          C   T          TGG    T  G     ATT      ATTATCAC     A       C     TA   -----------CA   -  -ACT     T     ----A     G   TCATAATA
       AAGGGTAAATTACAAC GACCCC TGA GT TGGTCAA TTA  AAAAACCCC TCTTGTTTGGGTAATTACA C ACCC TCAACTA         CTT CAC TCCACCCTTG GGT TCAAATTTAG   AATC TC AGATT   TGGAAT        TTTTA TTTGTAC CGTTT  TGC             TTC GA    CCACA TTTGA     GCAAG TGA        
       |||||||||||||||| |||||| ||| || ||||||| |||  ||||||||| ||||||||||||||||||| | |||| |||||||         ||| ||| |||||||||| ||| ||||||||||   |||| || |||||   ||||||        ||||| ||||||| |||||  |||             ||| ||    ||||| |||||     ||||| |||         
       TTCCCATTTAATGTTG TTGGGG ACT CA ACCAGTT AAT  TTTTTGGGG AGAACAAACCTATTAATGT G TGGG AGTTGAT         GAA GTG AGGTGGGAAT CCA AGTTTAAGTT   TTGG AG TCTAA   ACCTTA        GAGAT AGACATG GCAAA  ACG             AGG CT    GGTGT AGACT     TGTTC GCT        
AAAATTA                G      T   C  C       A   AC         -                   A A    A       ACTAAAACA   C   G          A   C          GTA    T  A     AGC      -----CAC     C       A     --   CATTTTTATCTCA   A  ACGT     T     ATATA     G   TTTTGTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End