Plant MITE

SE3520464

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6682
Mimulus guttatus
SE3520464
Mutator
M9
scaffold_9:12431405-12431710
GATAATAAT
GGGAAAAATACAGTTTTTGTCCCTCATGATTGCACCGATTTCACATT

Secondary structure and sequence

TSD TIR

5'

3'

 GATAATAATA      AA     T            T A     CC              TCCCCCATGTTAAAAAAAAACACATTTGGTCCCTTATGTTTCAAAAATTCAACACTTTTAATCCTTTCCGTCAATTTTCCGTTAACACTAACG
           GGGAAA  TACAG TTTTGTCCCTCA G TTGCA  GATTTCACATTTGG                                                                                             
           ||||||  ||||| |||||||||||| | |||||  ||||||||||||||                                                                                              
           CCCTTT  ATGTT AAAGTAGGGAGT C AACGT  CTAAAGTGTAAACC                                                                                             
ATAATAATAGC      -A     C            T A     AA              AGGGAGTACAAGGTTATTAAATTGTGAAAACCAGTAAAGGCAGTTAAATGGCAATCAGGCAATCAATTCCATCAGTACCTTGTACGAACTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520464

GATAATAATAGGGAAAAATACAGTTTTTGTCCCTCATGATTGCACCGATTTCACATTTGGTCCCCCATGTTAAAAAAAAACACATTTGGTCCCTTATGTTTCAAAAATTCAACACTTTTAATCCTTTCCGTCAATTTTCCGTTAACACTAACGGAATCAAGCATGTTCCATGACTACCTTAACTAACGGACTAACGGTAAATTGACGGAAATGACCAAAAGTGTTAAATTATTGGAACATGAGGGACCAAATGTGAAATCAATGCAAACTTGAGGGATGAAACTTGTAATTTCCCCGATAATAATA

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