SE3520468

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6686
  • Mimulus guttatus
  • SE3520468
  • Mutator
  • M3
  • scaffold_14:17886907-17887350
  • TAAATTTTA
  • TAAATTTTAGGGTAAATTACACCCACACCCTTGTGGTATGCTTAAATAATTTTAAGGTCCCTATGGTATTGATAATTACACTCACCCCCCTGAAACGTAGTTATAAACTCTAACGGAATAATGCATTGGATACATTATTCCGATAACGTTCTAATGGACTATT

Secondary structure and sequence

TSD    TIR
5'



3'
    T                            T      C                     A                          C      G                C  A                A     C     AC                ACTC    CT                T           -  G   --------     T  CAT
TAAA TTTAGGGTAAATTACACCCACACCCTTG GGTATG TTAAATAATTTTAAGGTCCCT TGGTATTGATAATTACACTCACCCCC TGAAAC TAGTTATAAACTCTAA GG ATAATGCATTGGATAC TTATT CGATA  GTTCTAATGGACTATT    TTAG  AGTGGTGGAGATAACA AGAGTTATGGG GA TTA        TGGGG GA   
|||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||| ||||| |||||  ||||||||||||||||    ||||  |||||||||||||||| ||||||||||| || |||        ||||| ||    
ATTT AAATCCCATTTAATGTGGGTGTGGGGAC CCATAC AATTTATTGAAATTCCAGGGA ACCATAGCTATTAATGTGAGTGGGGG ACTTTG ATCAATATTTGAGATT CC TATTACGTAACCTATG AATAA GCTAT  CAAGATTGCCTGATAA    AGTC  TCACCACCTCTGTTGT TCTCAATACCC CT AAT        ACCCC CT   
    T                            T      C                     C                          A      A                A  C                C     T     CT                CCAA    CT                T           A  A   TCTTTATA     -  CGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End