SE3520470

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6688
  • Mimulus guttatus
  • SE3520470
  • Mutator
  • M15
  • scaffold_164:34473-34850
  • TACTTTTTA
  • TAGGGTAAATATCACATAACCCCTGTGGTTACAAGCTTTTGCAGATGACCCCCTTATGCTTTTAATATCATCACATAACCCCCTCGTAGTTGATGGGTAGCTTCCGGTAGTTTTTCTATCAAATTTAACCGCCAGTGTCAAACGTCAAAGTAATTTTTTTGCAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TACTTTT           T   A     -   G                       C  C   A G   T        T      A C    C  A   -GAT         C    -         A    A         CA         G  A   TAA   T        TAACCCCATTTGCTTT
       TAGGGTAAATA CAC TAACC CCT TGGTTACAAGCTTTTGCAGATGA CC CTT T CTT TAATATCA CACATA C CCCT GT GTT    GGGTAGCTT CGGT AGTTTTTCT TCAA TTTAACCGC  GTGTCAAAC TC AAG   TTT TTTGCAGA                
       ||||||||||| ||| ||||| ||| ||||||||||||||||||||||| || ||| | ||| |||||||| |||||| | |||| || |||    ||||||||| |||| ||||||||| |||| |||||||||  ||||||||| || |||   ||| ||||||||                 
       ATCCCATTTAT GTG ATTGG GGA ACCAATGTTTGAAAACGTTTACT GG GAA A GAG ATTATAGT GTGTAT G GGGA CA CAA    CCCATCGAA GCCA TCAAAAAGG AGTT AAATTGGCG  CACAGTTTG AG TTC   GAG AGACGTTT                
ATTTTTC           C   A     A   G                       A  A   C G   C        C      C T    A  C   ACAC         A    A         C    G         CA         A  A   -CC   T        TTACTTTCCCTTTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End