SE3550471

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6689
  • Mimulus guttatus
  • SE3550471
  • PIF/harbinger
  • To1
  • scaffold_6:6418762-6419045
  • TAA
  • AGGTGGTGTTTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ------A    ATTTAAAAGCAGAAGTTAGTGATTGTGAGTTAAGTTGGAATTAAGTGATTATTTCTAAAAGTTGGGGGTGTTTACAAATTAGCTGGAAAGTCAACTAAAATAGAAAAAACAGGTAC
  AGGTGGTGTTTGCAAA       GCTT                                                                                                                    
  ||||||||||||||||       ||||                                                                                                                     
  TCCACCACAAACGTTT       TCTT                                                                                                                    
AA                ACTAAAA    TATCTAATACTCAAAAAAAAAACGTGTATTAGACAAAAAAGACAAAAATCCACAAACATTTTGTTCGAAAACAAAAACGAAGAGAATTTTATTCGATATTAAAATTTTCGTGGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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