Plant MITE

SE3520472

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6690
Mimulus guttatus
SE3520472
Mutator
M48
scaffold_7:16456613-16457206
TTATTTTTA
AGGGTAAATTCCACTTTACCCCCTTGTACTCTGCCCAAGAACCACTTTACCCCCTCGTACTCTTAATTTTGTCGATTTACCCCCTTGTACTTGTACAATTTCCCAATACAACCCTCTTCATCAACTTTTTTCGATTTTGACTCTGACGCCATTTGGTCA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTTT                  CC               CA   AC                                       C                            A    C   A    C    T                             AGA     AATATTGACGTAAATATTGAATTTTTTCGATTTTGACTCTCAAGATTAGAAAAGAGAAAGTTTCACACATTCATATATTTTTTTCTTTGCACTGGGTGGAATCGATCAATTTTTGGGTCTTGAT
        AGGGTAAATTCCACTTTA  CCCTTGTACTCTGCC  AGA  CACTTTACCCCCTCGTACTCTTAATTTTGTCGATTTACC CCTTGTACTTGTACAATTTCCCAATACA CCCT TTC TCAA TTTT TCGATTTTGACTCTGACGCCATTTGGTCA   GTCAA                                                                                                                            
        ||||||||||||||||||  |||||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||| |||| |||||||||||||||||||||||||||||   |||||                                                                                                                             
        TCCCATTTAAGGTGAAAT  GGGAGCATGAGACGG  TCT  GTGAAATGGGGGAGCATGAGAGTTAAAATAGCTAAATGG GGAACATGAACATGTTAAAGGGTTATGT GGGA AAG AGTT AAAA AGTTAAAACTGAGATTGCGGTAAACCAGT   TGAGA                                                                                                                            
ATTTTTAT                  -A               AC   CA                                       A                            C    A   A    A    C                             ---     CATTTAATGTTTTAACGGTGACGGATATTGCGCAGCAAAGAGGAGGCAGTTATAACAGTAAAGAAGAAGAGGGTGGTCAAGGGGAAGGTTCTATAGGGGTTTAACTTGGGGATTGAATCATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520472

TTATTTTTAGGGTAAATTCCACTTTACCCCCTTGTACTCTGCCCAAGAACCACTTTACCCCCTCGTACTCTTAATTTTGTCGATTTACCCCCTTGTACTTGTACAATTTCCCAATACAACCCTCTTCATCAACTTTTTTCGATTTTGACTCTGACGCCATTTGGTCAAGAGTCAAAATATTGACGTAAATATTGAATTTTTTCGATTTTGACTCTCAAGATTAGAAAAGAGAAAGTTTCACACATTCATATATTTTTTTCTTTGCACTGGGTGGAATCGATCAATTTTTGGGTCTTGATTTTTACTAAGTTAGGGGTTCAATTTGGGGATATCTTGGAAGGGGAACTGGTGGGAGAAGAAGAAATGACAATATTGACGGAGGAGAAACGACGCGTTATAGGCAGTGGCAATTTTGTAATTTACAGAGTTGACCAAATGGCGTTAGAGTCAAAATTGACAAAAATTGAAGAAAAGGGCTGTATTGGGAAATTGTACAAGTACAAGGAGGTAAATCGATAAAATTGAGAGTACGAGGGGGTAAAGTGACTCTCAGGCAGAGTACGAGGGATAAAGTGGAATTTACCCTTATTTTTA

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