SE3530473

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6691
  • Mimulus guttatus
  • SE3530473
  • hAT
  • Hat29
  • scaffold_8:16109022-16109507
  • GTTTTCAC
  • ACCTATGTTACATAGACACGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTTC    A                G A  GGGACACGGCGACACACGGATACGGACACCGGGATACACTTAATCAAAAAAAGTAGGACACGGGAACGTGGGGGATACGTGTAAATATTAAAAATATAGGGGTTTATTTATAAATTATTACTAAATTATGTTTTATTTTTTATGTACAATATTAAAATATACATGAATATTTAATACGTTTAATCGTTTATTCAAATAAATTTGCAATTAA
      ACCT TGTTACATAGACACGG A CG                                                                                                                                                                                                                   
      |||| |||||||||||||||| | ||                                                                                                                                                                                                                   T
      TGGA ACAATGTGTCTGTGCC T TT                                                                                                                                                                                                                   
CACTTT    G                G -  GTGTACTTCAAAGGGGCACAGCCTTTGCAAAGCCTGTGCTTTGCGCTTCTGTGGAAATTCTTTGCGACAACCCGGCACAGACATTATAAACTTTTCAACCTGTGCGCACAGTTCCCTTTTTTTTTTCTTAAAAGAAAAAATGTTTAGACTAATAAACCCAAAAACACTTTGACCTCCTTATTTAACCGTCGAGAGAGAGTAATTAGGCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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