SE3520474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6692
  • Mimulus guttatus
  • SE3520474
  • Mutator
  • M49
  • scaffold_11:1246192-1246527
  • TTAAGAAAA
  • AAGGGAAATTTACAGTTTTCATGCCTCAAATTTGCATTAATATCACATTTGGTTTCTTCATGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAGAA        TT            GC  C   --T          A   C        T         AAAAT      T             G       T  TT G CAT             A    AT -    CTTAGTTCATCAGCTACGGTAATGATGG
       AAGGGAAA  TACAGTTTTCAT  CT AAA   TTGCATTAAT TCA ATTTGGTT CTTCATGTT     AAAATA ATTTGGTCCCTCG GTTTCAA AA  T A   TTTTGGTCATGTC GTCA  T TACC                            
       ||||||||  ||||||||||||  || |||   |||||||||| ||| |||||||| |||||||||     |||||| ||||||||||||| ||||||| ||  | |   ||||||||||||| ||||  | ||||                            A
       TTCCCTTT  ATGTCAAAAGTA  GA TTT   AACGTGGTTA AGT TAAACCAG GAAGTACAA     TTTTAT TAAACTAGGGAGT TAAAGTT TT  A T   GAAGTCAGTAAAG GCAG  T AAAA                            
AAAAGAA        TT            GA  T   TTC          A   A        -         GTGTT      T             A       T  TT G TAT             -    -- G    GTAATTTTGATTGCCTTAGTTTGCACAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End