Plant MITE

SE3550477

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6695
Mimulus guttatus
SE3550477
PIF/harbinger
To2
scaffold_10:15749656-15749896
TAA
AGGCCTCGTTTGGTTGGGGAGATTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA                -----GG        -----CCAT      C   -A           T   ---          TATAC CAATAAATTACCTGGTCGACCCGCAAATATTATGTTATCATG
  AGGCCTCGTTTGGTTG       GAGATTAG         GATTAA TAA  TAATGGGACTT GTT   TGATGTTTGC     C                                          
  ||||||||||||||||       ||||||||         |||||| |||  ||||||||||| |||   ||||||||||     |                                           
  TCCGGAGCAAACCAAC       TTCTAATC         TTAATT ATT  ATTACTTTGGG TAA   AATAATCTGG     A                                          
AA                GGTTCTA        AATTCTATT      A   AG           T   CAT          ----- ACCTTCTAGGTTATTTTTTGTACGGATTTTCCGTTCTATTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550477

TAAGGCCTCGTTTGGTTGGGGAGATTAGCCATGATTAACTAAATAATGGGACTTTGTTTGATGTTTGCTATACCCAATAAATTACCTGGTCGACCCGCAAATATTATGTTATCATGCCTTATCTTGCCTTTTAGGCATGTTTTTTATTGGATCTTCCAAGGTCTAATAATACAATTGGGTTTCATTAGATTAATTAATTTTATCTTAACTAATCTTATCTTGGCAACCAAACGAGGCCTAA

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