SE3520479

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6697
  • Mimulus guttatus
  • SE3520479
  • Mutator
  • M8
  • scaffold_10:2298502-2298967
  • ATATTTTTA
  • GGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACATGTACCCCTCAACTATGAATCTTCTTACATCTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
ATATTTTTA                -                            AA                    A  TG       C               T    C         A    G       CAACAT    A  T    GTC  A          C     --  A  C       G AAAAATAC  - T  T   GCACCACAATCTGATATATACAAGCCAAAAA
         GGGTAAATTACAACCA CCCCTGAGGTATGGTCAAATTACGAAAA  CCCCTCTTGTTTGGGTAATT CA  TACCCCT AACTATGAATCTTCT ACAT TCCACCCTT TGGT TCAAATT      AATC TC AGAT   GT GAATATTCTC AGTTT  GA CT GTTTTGT C        TG T TC GAT                               
         |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||||||| |||| ||||||||| |||| |||||||      |||| || ||||   || |||||||||| |||||  || || ||||||| |        || | || |||                               A
         CCCATTTAATGTTGGT GGGGACTCCATACCAGTTTAATGTTTTT  GGGGAGGACAAACCCATTAA GT  GTGGGGA TTGATATTTAGAAGA TGTG AGGTGGGAA GCCA AGTTTAA      TTAG AG TCTA   TA CTTATAAGAG TTAAA  CT GA CAAAATA G        AG T CG AGG                               
ATTTTTATA                A                            GA                    C  TA       A               T    C         C    A       ATCACT    A  T    ATA  C          -     AC  A  -       G -----ATA  C -  -   TGTAAAACTTCGATCTACTAGTATTCTACAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End