SE3520480

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6698
  • Mimulus guttatus
  • SE3520480
  • Mutator
  • M16
  • scaffold_8:14590244-14590453
  • CATTATTTA
  • GGTTCCTTCGACCCTACACCCGGTGAAAAACACCGGGTGTGTCTTCTGCTGCCACGTGTTCTTTTTTTTTATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
CATTATTTA    CC                          C      T                   T         -      TCTAAAATCC    -    AAA   TA
         GGTT  TTCGACCCTACACCCGGTGAAAAACA CGGGTG GTCTTCTGCTGCCACGTGT CTTTTTTTT TATTTT          ATAA AGGT   CCC  
         ||||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||          |||| ||||   |||   
         CTAA  AAGCTGGGATGTGGGCCACTTTTTGT GCCCAC CAGAAGACGACGGTGCACA GAAAAAAAA ATAAAA          TATT TCTA   GGG  
ATTTATTAC    AC                          A      C                   -         C      ----------    A    -AG   CG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End