SE3520483

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6701
  • Mimulus guttatus
  • SE3520483
  • Mutator
  • M19
  • scaffold_2:685216-685964
  • TAGATATTT
  • AGATATTTGGCTTAATTCTACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAATAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCATTCACAATGCACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -                                                                                                     T  C         TCAAT    T       GCAATTTTATTTTTCATTGGTGTTTTTCTTTTTGGGGTACAAAATAAAAAAAATTGTTGTTTTCTTGAACCTCAAACCTAATTTCGAGCGGACAAAGTGCGAAAAAATAAAAATTACACCGGATTATTTTAAAAAAACTACATTATCTTACAAAAGAAAAATAAAAAAAATAATCTTTTATCACTAAATTATTCGATTGTGGATCTTTTATGTCAATTGTTTGTAAAATATTAGGTG
 AGATATTT GGCTTAATTCTACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAATAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCAT CA AATGCACCC     TGAA AATAAAG                                                                                                                                                                                                                                             
 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||     |||| |||||||                                                                                                                                                                                                                                             A
 TTTATAGA CCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTTATTTAATTATCGTGAAACGTGGGAGCTTTATGTTATTTAGTA GT TTACGTGGG     GTTT ATTAAAA                                                                                                                                                                                                                                             
         T                                                                                                     C  A         -----    -       AATTTCGATTTTTTATATTTAAATTATAAACATCACTGTCAAAAAATCCTACGGTTTACAGTTAAAAAAAAATAAGTAGTTAGTAAAACTTTGATATTTCACGTTTTTATTTTTATGTAAGGTAGTTGTATAAATTTTTAATATAACAAAATAGTTTTATTTTATAAAATGCTTTTTTTTAGTAAGTCGATAATGCAATAGTTCAATAGACTTTTAATAAAAAAGAAGGTTTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3