SE3520486

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6704
  • Mimulus guttatus
  • SE3520486
  • Mutator
  • M47
  • scaffold_5:16085441-16085997
  • TAATTATTA
  • TAATTATTAGGGTAAATTACGAAAAAAACCCTGAACATAGGCTAAATTACGAACAACACCCCACCTATCCATAATTACCAAAACCCCC

Secondary structure and sequence

TSD    TIR
5'



3'
    T              C     AAA        A    C        GAA   -    C         A         AA      CAAC    TTC   A           C C             T   C   T  ATC       G   AA  -AAT    C -      A   C          CGAC             ATG          T  A    C    A               -CCTTTACAC   ATATTTATTCCTCTTAAAT
TAAT ATTAGGGTAAATTA GAAAA   CCCTGAAC TAGG TAAATTAC   CAA CACC CACCTATCC TAATTACCA  ACCCCC    GTTT   TCC TCTTACATCGA C CCTTATGGTGTGA TTT CAC GA   TTTTTGA TCC  GG    TATT C CGAAAA TGC GATTTTACCC    AGACGTGGCATTT   TATGCTACTT TC AAGA AAAA TTAACCTTAGGGGGG          GGA                   
|||| |||||||||||||| |||||   |||||||| |||| ||||||||   ||| |||| ||||||||| |||||||||  ||||||    ||||   ||| ||||||||||| | ||||||||||||| ||| ||| ||   ||||||| |||  ||    |||| | |||||| ||| ||||||||||    |||||||||||||   |||||||||| || |||| |||| |||||||||||||||          |||                   A
ATTA TAATCCCATTTAAT CTTTT   GGGACTTG ATCC ATTTAATG   GTT GTGG GTGGATAGG ATTAATGGT  TGGGGG    CAAA   AGG AGAATGTGGTT G GGAATGCCACACT AAA GTG CT   AAAAACT AGG  CC    ATAA G GCTTTT ACG TTAAGATGGG    TCTGCACCGTAAA   ATATGGTGAA AG TTTT TTTT AATTGGAGTCTCCCC          TGA                   
    T              A     GGG        A    A        -AG   T    A         A         --      -CTA    CAA   C           A A             T   A   T  AAA       A   --  ACAT    A C      A   A          AACA             GAA          C  C    T    C               ATTACCATTA   TTTTTTCAACACTTCTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End