SE3550487

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6705
  • Mimulus guttatus
  • SE3550487
  • PIF/harbinger
  • To5
  • scaffold_4:9285010-9285380
  • TAG
  • GGGCAATGTTTGGAACTGTTTTTATTTTGTTTTCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              AC      ------       T       ---------------------------------------GATTCCCCAAAAT        ACTTATTAAACTTCTCAAATAATTTTCTCAAAACAATCTCAAAAGTTTCTCTCTCATTCAGACATGATGTGACTGCTACAGTAAACAATGTCTTCACTGAAAA
  GGGCAATGTTTGGA  TGTTTT      TATTTTG TTTCATT                                                    AAAATTGT                                                                                                       
  ||||||||||||||  ||||||      ||||||| |||||||                                                    ||||||||                                                                                                       A
  TCCGTTACAAACTT  GCAAAA      ATAAAAC AAAGTAA                                                    ATATAAAA                                                                                                       
GA              -C      CCTTGA       T       AACTCCTTTATACAAAACTCCCTTCTTAAACTCTTACTTTCATTACAAACAA        CCTTCCTCTGTTTTATGTGACATCGTCAGTTTAGTACAAATTTTCACAATCTTTTTTCATAAAATCTTCTTTTTTTTAACTTTCTACTTCACTACAAATAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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