SE3520488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6706
  • Mimulus guttatus
  • SE3520488
  • Mutator
  • M8
  • scaffold_11:19882444-19882908
  • TAAATAGAA
  • AGGGTAAATTACAACCACCTCCTGAGGTATGGTCAAATTACGAAAAAACCCTGCTGTTTGGATAATTACATCTACCCCTCAACTATGAATCTTTTTACATCTCCACACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAGA                   T                          -A     GC       A        T     CC                      C   AC      AT   G       CAACAT    A        CC             -TAG    T           G AAAAATACAGTTTC   T  AC    ATC   TATATACAAGCCAAAAATA
        AGGGTAAATTACAACCACC CCTGAGGTATGGTCAAATTACGAAAA  ACCCT  TGTTTGG TAATTACA CTACC  TCAACTATGAATCTTTTTACAT TCC  ACCCTT  GGT TCAAATT      AATC TCTAGATT  GTGGAATGTTCTC    TTTG ACTCGTTTTGT C              CGA GC  CACA   TGA                   
        ||||||||||||||||||| ||||||||||||||||||||||||||  |||||  ||||||| |||||||| |||||  |||||||||||||||||||||| |||  ||||||  ||| |||||||      |||| ||||||||  |||||||||||||    |||| ||||||||||| |              ||| ||  ||||   |||                   C
        TCCCATTTAATGTTGGTGG GGACTCCATACCAGTTTAATGCTTTT  TGGGA  ACAAACC ATTAATGT GGTGG  AGTTGATATTTAGAAGAATGTG AGG  TGGGAA  CCA AGTTTAA      TTAG AGATCTAA  TACTTTATAAGAG    AAGC TGGGCAAAATA G              GCT CG  GTGT   ACT                   
AAGATAAA                   -                          GG     GA       C        T     -A                      C   --      CT   A       ATCACC    A        TA             TTAA    -           G ----------GTAA   -  GA    AAA   TCAATCTACTAGTATTCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End