Plant MITE

SE3510489

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6707
Mimulus guttatus
SE3510489
Tc1/Mariner
St4
scaffold_12:5548559-5548835
TA
TACTCCCTCTGTTCCACAATAGCTGTCTCTTTTTA

Secondary structure and sequence

TSD TIR

5'

3'

               AC     C   -         AA    TTTTTGTTCCAAATTATCTGTCACTTTAGATTTCCAATACTGTATTAAATGCATGTTTCCTGTTTTAACCTTATTAATGAAACTCTAATCATTATTTT
TACTCCCTCTGTTCC  AATAG TGT CTCTTTTTA  AATA                                                                                                  
|||||||||||||||  ||||| ||| |||||||||  ||||                                                                                                   
ATGAGGGAGGCAAGG  TTATT ACA GAGAAAAGT  GAAA                                                                                                  
               AT     C   A         --    AGTGTTTCTAATTCTTTGAGTTATTTATATAGATCTAAAATCTTTTTAGTATATCTTTACTGATTTTGTTGGAAATAATAAATTACTAAATATTCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510489

TACTCCCTCTGTTCCACAATAGCTGTCTCTTTTTAAAAATATTTTTGTTCCAAATTATCTGTCACTTTAGATTTCCAATACTGTATTAAATGCATGTTTCCTGTTTTAACCTTATTAATGAAACTCTAATCATTATTTTTCTCTTATAAATCATTAAATAATAAAGGTTGTTTTAGTCATTTCTATATGATTTTTCTAAAATCTAGATATATTTATTGAGTTTCTTAATCTTTGTGAAAAGTGAAAAGAGAACACTTATTTAGGAACGGAGGGAGTA

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