SE3520490

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6708
  • Mimulus guttatus
  • SE3520490
  • Mutator
  • M50
  • scaffold_10:15570287-15570820
  • TTTTTTTTA
  • AGGGTTAAATACAGTTTGCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTT                      CCTA      C         A      C - CA              C        ---   CCTTCACCTTACTAGTCAACTCTAACAGTGTTAGTTTTTGCAGTGTAGTTACCTTTTCACCCTTAGTCTTATTTGATAGAATTCAATGTAACGTTGGCAAAAAAAATCGAACACGTACATAAAAACAAAAATGGTTCCAGAAAAATATGACATGTAGTGTTTGGACCTAAAATATGG
        AGGGTTAAATACAGTTTGCACC    TACTAT GTCACTGTC CATATA C C  TGTACTATGAAATG GACAAAAC   GGT                                                                                                                                                                                 
        ||||||||||||||||||||||    |||||| ||||||||| |||||| | |  |||||||||||||| ||||||||   |||                                                                                                                                                                                  
        TTCCAATTTATGTCAAACGTGG    ATGATA TAGTGACAG GTATAT G G  ACATGATACTTTAC CTGTTTTG   GGT                                                                                                                                                                                 
ATTTTTTT                      AAAA      A         C      A A AG              A        TTG   CAGCAGGTAGATACAATGTTTTCAACAGGGAAAGTTATCGACAACTTTTTTAAAGACTGGTTTTATGGGGAAACTAACACATATTTTATACGCGTAGTAAGAAGTGAGTAAACATGAGTTAAACATTTATTTAATGAGCCAAATTTTTACAGAAGGCCATCAAGTTTAAGAGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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