SE3530491

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6709
  • Mimulus guttatus
  • SE3530491
  • hAT
  • Hat5
  • scaffold_4:15309572-15310067
  • TCTCCACG
  • GTAGACACGGCCACGGGCCGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTCCAC             C         --     -  --    A   TTCACTTTTTCCGGAACCGGAACCGGCCCGTAATATGCACGGGTCGGCCCGCCGGTTCTGGGCCTATCCGGGCAGGTTCCGGGTTGGCCCGGAAAATTTGTTTTTTTTTTTTTTTTAAATATTTGATGAATAAGTAAATTATAGGAAAAATTGGGGTGTGAGGGTATTTATAGGAAAAATTGGTTCACCCTGGCCGGTTC
       GTAGACACGGCCA GGGCCGGTT  CGGGC CG  GTTC CGG                                                                                                                                                                                                        
       ||||||||||||| |||||||||  ||||| ||  |||| |||                                                                                                                                                                                                        G
       TATCTGTGCCGGT CCCGGCCAA  CCCAG CC  GGCC GGC                                                                                                                                                                                                        
GCACCTC             A         AA     G  TT    G   AACTGCTGGGCCGGGTTGGGCAACTGGCCACTTGGCCGGGCCTTGGGCACTTGGTCGGGCAGCAGGGGCCCTGCCCGGGCCAAGATACTTTACCACTTAGCACTTGGCGGCCCGGCCGGGCCGCCAAGTGGGCTTAAATTTTTTTTTTTTTAAGTTTTTTTAAGTTTTTTTTTTTCGTTTATTGCCGATCACTTAGCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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