SE3520492

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6710
  • Mimulus guttatus
  • SE3520492
  • Mutator
  • M19
  • scaffold_3:17259756-17260186
  • TTCTTTTGG
  • GGGGCTTAATTTCACTTTGCACCCTTCAAATGCGTCATTTTAGCACTTTGAACCCCCTAAAGTAATAAATAGCATTTCGCACCTCAAAACATGTTTAATTATTCAAAGTGCACCCTAGTATATTTTTCAACC

Secondary structure and sequence

TSD    TIR
5'



3'
TTCTTTT                                CG       A        A   C CT        AA  A      C     -  A              A      GT   C  T   A        AA  ATAAT       C  C   T       C   C       T            CTATTCAA    TTTTTTCTTCAGGGTG
       GGGGCTTAATTTCACTTTGCACCCTTCAAATG  TCATTTT GCACTTTG ACC C  AAAGTAAT  AT GCATTT GCACC TC AAACATGTTTAATT TTCAAA  GCA CC AGT TATTTTTC  CC     TTTCTGT GT GAC TATTTTC GAT GTCAACA GGTCATTTTTGT        TTGA                
       ||||||||||||||||||||||||||||||||  ||||||| |||||||| ||| |  ||||||||  || |||||| ||||| || |||||||||||||| ||||||  ||| || ||| ||||||||  ||     ||||||| || ||| ||||||| ||| ||||||| ||||||||||||        ||||                C
       TTCCGAATTAAAGTGAAACGTGGGAAGTTTAC  GGTAAAA CGTGAAAC TGG G  TTTTATTA  TA CGTGAA CGTGG AG TTTGTACAAATTAG AAGTTT  TGT GG TCA ATAAAAGG  GG     AAAGGTA CA CTG ATAAAAG CTA CAGTTGT TCAGTAAAAGCG        GCTT                
GGTTTTC                                AT       C        G   A -T        AA  C      A     G  C              C      AC   A  T   A        CA  -ACTT       A  A   T       A   A       T            -------A    TTATGTAATCATGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End