SE3530493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6711
  • Mimulus guttatus
  • SE3530493
  • hAT
  • Hat25
  • scaffold_9:11963790-11964538
  • CCAGATAA
  • TAGGGTTGTTCATGGGTCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAGATAA                    ----       --  TTATCGGCCGATTATCGGCCCGACCCGACCAACCAACTCTTACAAATATGTAAAACCATTATCGGCCCGACTATTGTGAGTCGGGTAATGGTTGGCAACCGACTTTGTCGGTTGCCAAAACGGGTCGGTTGAAATTATCGGCCAATATCGGCCACATTAATTAAAATAAAAAATAAAAAATGAAAAAAATTATGCTATTCCTCTATCAAAATTCAGCAACAAACATTCCAATATTTCATGCCCAAAATCAATTTCAACGATATCACATGTTACAAATTAAATTTTCAAAAACAATATAAAAACTAAAACGAATCACTTTAGCCATTCACACTTT
        TAGGGTTGTTCATGGGTCGG    GTCGGTT  GA                                                                                                                                                                                                                                                                                                                                              
        ||||||||||||||||||||    |||||||  ||                                                                                                                                                                                                                                                                                                                                              C
        ATCCCAACAAGTACCCAGCC    TGGGCTG  GG                                                                                                                                                                                                                                                                                                                                              
AATAGACC                    AAAA       TT  CTGGGTAATAGACGGGCTGATAAGACCGGCTATTAACGGGTGGTTGGCTGGGCAAAACCAGCCCGGCTATTAAAATTGGCTGGGTACGTACCAACCCAGCCCATATCAAAGATTAAACAACTTTTCAGCCAACCGGCTATAATGGGCTGGTTGGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAGAGAAATACAAAAATGGCTGATAATCAAAGTTATAAATTAAAAACTGGAAAGCCACTTTACTTATTTTTATGTGTTGATTTTTTTGATATGAGAAGTAAAAGAGTTTAATTTTAATTTTCAAAGTCTTAAAACACAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3