SE3520494

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6712
  • Mimulus guttatus
  • SE3520494
  • Mutator
  • M2
  • scaffold_5:16832088-16832357
  • TTATAAAAA
  • AAGGGCAAATTATGGCCACCCCCAAGGTATGCTCAAATTATGAAAAAAACCCTCATGTTTGGATAATTACAACCACCCCCCTCAGCTATATATTGTCTTCCACG

Secondary structure and sequence

TSD    TIR
5'



3'
TTATAAA                     -  -      T C                 --- CC   T                 C               A         CC   ---TCCA      --    --    A
       AAGGGCAAATTATGGCCACCC CC AAGGTA G TCAAATTATGAAAAAAA   C  TCA GTTTGGATAATTACAAC ACCCCCCTCAGCTAT TATTGTCTT  ACG       CCCTCA  CGGT  GTTA 
       ||||||||||||||||||||| || |||||| | |||||||||||||||||   |  ||| ||||||||||||||||| ||||||||||||||| |||||||||  |||       ||||||  ||||  |||| A
       TTCCCGTTTAGTGCCGGTGGG GG TTCCAT C AGTTTAATGCTTTTTTT   G  AGT CAAACCTATTGATGTTG TGGGGGGAGTTGATA ATAACAGAA  TGC       GGGAGT  GTCA  CAAT 
AAAAATA                     T  A      T T                 TTA AA   -                 A               C         --   TCTTTTG      AA    AC    T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End