SE3520496

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6714
  • Mimulus guttatus
  • SE3520496
  • Mutator
  • M3
  • scaffold_3:13783003-13783428
  • TAAAATTTA
  • TAAAATTTACGATAAATTACACTTACTCCCCTGAGATATGCTAAAATAACTTTAAGGTCCCTGTAGTATCGGCAATTACAATCACCCC

Secondary structure and sequence

TSD    TIR
5'



3'
    A    C A            A T        A     T  A   AC              A       C            -   ATAAACATT     AA    --     -- A     GCATTGACTAAGTTATCCTGTTAGGGTCCTAACGTACTATTAGTTTCAGGCAGTCGTGGAGACATAGATCTCCTAACATTTCTTAAATCCTTATTA
TAAA TTTA G TAAATTACACTT C CCCCTGAG TATGC AA ATA  TTTAAGGTCCCTGT GTATCGG AATTACAATCAC CCC         GTTAG  ACCC  TAACA  G ATAAT                                                                                                
|||| |||| | |||||||||||| | |||||||| ||||| || |||  |||||||||||||| ||||||| |||||||||||| |||         |||||  ||||  |||||  | |||||                                                                                                T
ATTT AAAT C ATTTAATGTGGA G GGGGACTC ATACG TT TAT  AAATTCCAGGGACA CATAGCT TTAATGTTGGTG GGG         CTCTT  TGTT  TGGCC  G GTTTT                                                                                                
    A    C C            A T        C     T  C   CA              C       A            T   ---------     --    AT     TC -     AAATTACAGGACCCCTGGCTATACGTGATGTACGTAAACAAAGGGCGCCCCGTCAATCACAATGGTTATCTGCCTTTAAATATTTAAAATATATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End