SE3520497

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6715
  • Mimulus guttatus
  • SE3520497
  • Mutator
  • M11
  • scaffold_6:607383-607566
  • CAAAAGCTC
  • AGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAA    -CGAAAAATTAAAT     --    GA      C  GC    AT        AGTA    T   CAATCACAGAATTTATGTGTATGTG
    AGCT              GCTAT  ACCT  TTATTT TA  GGCT  ATTTGAAT    GAGT ATA                         
    ||||              |||||  ||||  |||||| ||  ||||  ||||||||    |||| |||                         T
    TCGA              TGATG  TGGA  AATAAA GT  CCGA  TAAACTTG    GCAT TTA                         
   C    AAACCCCCTCAATC     TT    AC      T  AA    CT        ----    -   AACTAATTTATTAATGAGTGCTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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