SE3520498

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6716
  • Mimulus guttatus
  • SE3520498
  • Mutator
  • M9
  • scaffold_14:7762818-7763153
  • AATAAAAAT
  • GGGAAAAATAGAGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
 AATAAAAATA      AA  G     GTGG                GATT              C                     T                 A    C         TTA           C     T      AA  TA  GGAATCAAGCGTGTGTCC
           GGGAAA  TA AGTTT    CCCTCAAGTTTGCACC    TCACATTTGGTCCC CATGTTCACAAAAAATATATT GGTCCCTTATGTTTCAA AATT AACATTTTT   GTCATTTTCGT AATTT CCGTTA  AC  AC                  
           ||||||  || |||||    ||||||||||||||||    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||   ||||||||||| ||||| ||||||  ||  ||                   
           CCCTTT  AT TCGAA    GGGAGTTTAAACGTGG    AGTGTAAACCAGGG GTACAAGTGTTTTTTATGTAA CCAGGGAGTACAAGGTT TTAA TTGTGAAAA   CAGTAAAGGCA TTAAA GGCAAT  CG  GG                  
ATAAAAATAAC      -A  G     AGTA                --AT              A                     T                 A    A         --C           A     T      --  --  TAATCAATTCCGTTACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End