Plant MITE

SE3520499

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6717
Mimulus guttatus
SE3520499
Mutator
M9
scaffold_7:8663742-8664076
ACTTAATTA
TAATTAAGGGAAAAATACAGTTTTCATCCCTCGAGTTTGCACTAATTTCACATTTAGTCCCTCATGTTCAGAAGAAACACATTTGGTCCCTCGTGTTTCAAAAATTCAACACTTTTAGT

Secondary structure and sequence

TSD TIR

5'

3'

ACT       --       A         C              C   A   T                            AC                    C  A    C         A  CTTG           ---------      CAAACCAACGGAATCAAGTG
   TAATTAA  GGGAAAA TACAGTTTT ATCCCTCGAGTTTG ACT ATT CACATTTAGTCCCTCATGTTCAGAAGAA  ACATTTGGTCCCTCGTGTTT AA AATT AACACTTTT GT    TCCGTCAATTT         TCCGTT                    
   |||||||  ||||||| ||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||| || |||| ||||||||| ||    |||||||||||         ||||||                    T
   ATTAATT  CCCTTTT ATGTCAAAA TAGGGAGTTCAAAC TGG TAA GTGTAAATTAGGGAGTACAAGTTTTTTT  TGTAAACCAGGGAGTACAAA TT TTAA TTGTGAAAA CA    AGGTAGTTAAA         GGCAGT                    
  A       CA       A         A              A   C   C                            -A                    C  A    A         C  ATAA           TAGAAATCA      CAATTCCGTCACTGCCCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520499

ACTTAATTAAGGGAAAAATACAGTTTTCATCCCTCGAGTTTGCACTAATTTCACATTTAGTCCCTCATGTTCAGAAGAAACACATTTGGTCCCTCGTGTTTCAAAAATTCAACACTTTTAGTCTTGTCCGTCAATTTTCCGTTCAAACCAACGGAATCAAGTGTGTGCCCGTCACTGCCTTAACTGACGGACTAAAGATAAATTGATGGAAATAACCAAAAGTGTTAAATTATTCAAACATGAGGGACCAAATGTATTTTTTTGAACATGAGGGATTAAATGTGCAATCGGTACAAACTTGAGGGATAAAAACTGTAATTTTCCCACTTAATTAA

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