SE3520501

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6719
  • Mimulus guttatus
  • SE3520501
  • Mutator
  • M21
  • scaffold_11:9623253-9623698
  • TATATGTTA
  • ATATGT

Secondary structure and sequence

TSD    TIR
5'



3'
 T      TACT  AA  TTAAAC         G      T                                C     CTAA     T                  C     AC      CCTTTGAC                       T         AA    -   CA   A   G    C    T           G   -T     TTGAATTT  G      CA
  ATATGT    GA  TG      GTCGTTTCA TTTTAT AATATTGTTTTGATTTCGAATGTGATTTTGGC ATTTT    TCTGA TTTGGCAAAATTTGAAAC CGAAA  TGTAGT        TCTTTGAGTTAGCTTTCTAATCC AACTTGAAT  GCTA GAT  GAT TCG GTGA AAAG TATGCATGAAT AGT  ACATT        TA ATAACT  
  ||||||    ||  ||      ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||    ||||| |||||||||||||||||| |||||  ||||||        ||||||||||||||||||||||| |||||||||  |||| |||  ||| ||| |||| |||| ||||||||||| |||  |||||        || ||||||  A
  TGTATA    CT  AC      TAGCAAAGT AAAATG TTATAACAAAGCTGAAGTTTGTACTAAAACTG TAAAA    GGACT AAACCGTTTTGAGTTTTG GTTTT  ATATCA        AGAAACTCAATCGAAAGATTAGG TTGAACTTA  TGGT CTA  CTA AGC CACT TTTC ATACGTATTTA TTA  TGTAA        GT TATTGA  
AT      -TCC  AC  TACTTT         G      C                                A     CTTC     T                  T     AA      --------                       -         -G    T   AC   C   A    C    T           G   CT     -------C  G      AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End