Plant MITE

SE3550502

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6720
Mimulus guttatus
SE3550502
PIF/harbinger
To2
scaffold_13:15454224-15454475
TTA
AGGCCTCGTTTGGTTGGGGAGATTAGCCATGAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                -----GG           T   TA        -A G GACTTTGTTTGATGTTTGGTATCCCCAACAACTTGCCGGGTCGACCCGCAAATATTATGTTATCATGGTTTTTC
  AGGCCTCGTTTGGTTG       GAGATTAGCCA GAT  ACTAAATA  T G                                                                          
  ||||||||||||||||       ||||||||||| |||  ||||||||  | |                                                                          T
  TCCGGAGCAAACCAAC       TTCTAATCGGT CTA  TTAATTTA  A G                                                                          
AT                AGTTCTA           T   TT        TT - ATTACTTTTGGGTTAATAAAATAGCCTGGGGCACTGTAGGTTGTTTTTTCGAGGGAGCTTTCGTTCTATTCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550502

TTAGGCCTCGTTTGGTTGGGGAGATTAGCCATGATTAACTAAATAATGGGACTTTGTTTGATGTTTGGTATCCCCAACAACTTGCCGGGTCGACCCGCAAATATTATGTTATCATGGTTTTTCTTGTCTTATCTTGCTTTCGAGGGAGCTTTTTTGTTGGATGTCACGGGGTCCGATAAAATAATTGGGTTTTCATTAGATTATTTAATTTTATCTTGGCTAATCTTATCTTGACAACCAAACGAGGCCTTA

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