SE3520503

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6721
  • Mimulus guttatus
  • SE3520503
  • Mutator
  • M3
  • scaffold_12:4274674-4275115
  • TTTATTTTT
  • GGGTACATTACACCTACATCCCTGGGGTATGCAAAAATTACTTTAAGGTCCATGTGGTATTGGTAATTACAGCCACACCCCTGAAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTTT     C       C           GG     A    TT            A          G        GC A A    -       ATTACC      CAGATTTC     CTGGGGACATATATGCACTTTATTTGTTTCCCGCGGGGCTGTTAATGCTACCATAGACGAAAATTTATAAATCTTATATAAAATAATAAAGATTTAAGGAATG
         GGGTA ATTACAC TACATCCCTGG  TATGC AAAA  ACTTTAAGGTCC TGTGGTATTG TAATTACA  C C CCCC TGAAACA      GGAGCC        ATGTC                                                                                                       
         ||||| ||||||| |||||||||||  ||||| ||||  |||||||||||| |||||||||| ||||||||  | | |||| |||||||      ||||||        |||||                                                                                                       T
         CCCAT TAATGTG ATGTAGGGGCT  ATACG TTTT  TGAAATTCCAGG ATATCATAGC ATTAATGT  G G GGGG GCTTTGT      CTTTGG        ATTAC                                                                                                       
TTTTTATTT     T       A           AA     A    CT            G          -        GA C -    T       AACAAA      --------     CTTATTACGTAATCTATTCAATATGGGAATCCCAAGATTGCCAGATAATCAAAGTCCGTCACCACCATTGTTGTATCTCGTTCCTCCACTGTACCTACAGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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