SE3520505

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6723
  • Mimulus guttatus
  • SE3520505
  • Mutator
  • M9
  • scaffold_17:625589-625918
  • TTCAATCGT
  • GTAGGGAAAATTACAGTTTTCATCCCTCAAGCTTGTTTCACATTTGGTCCCTCATATTCGTGAAAAACACATTTGGTCCCTCGTGTTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCAATC T        T   A                C    ------    C              A    TGA                            TAAGTT                           ACTG  A      CAGTTAAGGCAGTGATGGGC
       G AGGGAAAA TAC GTTTTCATCCCTCAAG TTGT      TTCA ATTTGGTCCCTCAT TTCG   AAAACACATTTGGTCCCTCGTGTTTCAA      AACACTTTTGGTCATTTCCGTCAATTT    GT GTCCGT                    
       | |||||||| ||| |||||||||||||||| ||||      |||| |||||||||||||| ||||   ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||    || ||||||                     
       C TCCCTTTT ATG CAAAGGTAGGGAGTTC AACG      AAGT TAAACCAGGGAGTA AAGT   TTTTGTGTAAACCAGGGAGTACAAAGTT      TTGTGAAAATCAGTAAAGGCAGTTAAA    TG CAATTA                    
ATGCTAA T        T   C                A    TGGCTA    A              C    GTG                            TTAAAC                           ---A  -      TGATTACCTTAGTTCGCACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3