SE3550506

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6724
  • Mimulus guttatus
  • SE3550506
  • PIF/harbinger
  • To2
  • scaffold_11:19671796-19672027
  • TTA
  • AGGCCTCGTTTGGTTGGTAAGATTAGCCATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     TC         G  A   -----      T   TA     ATACTTGAACTTTGTTTGATGTTTGGTAAACCCAATAACTTACCGGGTCGGCCCTTAAATATTATGTTATCA
  AGGCC  GTTTGGTTG TA GAT     TAGCCA GAT  ACTAA                                                                        
  |||||  ||||||||| || |||     |||||| |||  |||||                                                                         
  TCCGG  CAAACCAAC GT CTA     ATCGGT CTA  TCTAA                                                                        
AT     TA         G  A   TCCGA      T   -T     TCTATTAGATTTCTTTTGGGTTAACAAAATAACCTGGGGCCTTCCAGGTTGTTTTTTGGAGAGATTTTCCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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