Plant MITE

SE3530507

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6725
Mimulus guttatus
SE3530507
hAT
Hat26
scaffold_4:19442635-19442846
CGTGCAAC
TGCAACCAGGGGCGGATCCAGGGGGTTTTGGGTGGGGGGGC

Secondary structure and sequence

TSD TIR

5'

3'

CG    AC                 GGT    G  G       GGAAAAAAA     GGGGTAAAATGGTATAAAATTTTAATTTTGGGGAACTAAAGTGTATAAATAAATA
  TGCA  CAGGGGCGGATCCAGGG   TTTG GT GGGGGGC         GTTTT                                                       
  ||||  |||||||||||||||||   |||| || |||||||         |||||                                                        
  ACGT  GTCCCCGCCTAGGTTCC   GAAC CA CCCCCCG         GGGCG                                                       
CA    GC                 ---    A  A       ---------     GGGACGTCTTAAAAAAAAAATGTAAAATAAAAAAATTATAAAACCTAATAAATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530507

CGTGCAACCAGGGGCGGATCCAGGGGGTTTTGGGTGGGGGGGCGGAAAAAAAGTTTTGGGGTAAAATGGTATAAAATTTTAATTTTGGGGAACTAAAGTGTATAAATAAATACATAAATAATCCAAAATATTAAAAAAATAAAATGTAAAAAAAAAATTCTGCAGGGGCGGGGCCCCCCAACACAAGCCTTGGATCCGCCCCTGCGTGCAAC

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