SE3520508

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6726
  • Mimulus guttatus
  • SE3520508
  • Mutator
  • M3
  • scaffold_9:12432700-12433147
  • TAACATATT
  • GGGTAAATTACACCTACACCCCTGCGGCACGCTAAAATAACTTGAAGGTCCATGTAGTATTGGTAATTACAGTCACACCCCTAAAGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACATATT                        C  CAC             GA     CA G                      AC    AAA     TACC   GC AAGATTTCGTGTCCTGGGGACCGATATGCACTATATATTGTTTCCCCGCGGGGCTGTTAATGCTATCATAGACATAAAATTATAAATTTTATATAAAATAAGAAGAATTTAAAAAATG
         GGGTAAATTACACCTACACCCCTG GG   GCTAAAATAACTT  AGGTC  T TAGTATTGGTAATTACAGTCAC  CCCT   GAAAT    GGA  C                                                                                                                      
         |||||||||||||||||||||||| ||   |||||||||||||  |||||  | ||||||||||||||||||||||  ||||   |||||    |||  |                                                                                                                      T
         CCCATTTAATGTGGATGTGGGGAT TC   CGATTTTATTGAA  TCCAG  A ATCATAGCCATTAATGTTAGTG  GGGA   CTTTG    CAA  T                                                                                                                      
TTATACAAT                        T  ATA             AC     AG G                      -A    ---     -TAA   -- CTTTGGGATTGCCTTATTATGTAACCTATTCAATAAAGCAATCCCTAGATTGCCTGATAATCAAAGTCCGTCACAACCTCTGTTTGTATCTCTTGATCTCACAGTGTGCTGAGAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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