SE3520509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6727
  • Mimulus guttatus
  • SE3520509
  • Mutator
  • M9
  • scaffold_14:1382122-1382457
  • AATAAATAT
  • GGGAAAAATACAGTTTTTATCCCTCAAGTTTGTATTAATTTCACATTTGGTCTCTCATATTTACAAAAAACATATTTAGTCTCTTATGTTTCAGAAATGCAACACT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAATATC       A                                          -    T   A                  A                    GC      TTTAGCT   G          TCCTTTAAA   AA   AATC     TATGCA
          GGGAAAA TACAGTTTTTATCCCTCAAGTTTGTATTAATTTCACATTTGG TCTC CAT TTTACAAAAAACATATTT GTCTCTTATGTTTCAGAAAT  AACACT       GTT CCGTCAATTT         TCC  TGG    AAGCG      
          ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||  ||||||       ||| ||||||||||         |||  |||    |||||       
          CCCTTTT ATGTCAAAAGTAGGGAGTTCAAACGTGGTTAAAGTGTAAACC AGGG GTA AAGTGTTTTTTGTGTAAA CGGGGAGTACAAAGTTTTTA  TTGTGA       TAA GGCAGTTAAA         AGG  ATC    TTCGT      
CTATAAATAA       A                                          C    -   C                  C                    AA      TAACAAG   A          -TAACAATC   CA   -AAT     CACTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3