SE3520512

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6730
  • Mimulus guttatus
  • SE3520512
  • Mutator
  • M2
  • scaffold_2:14491456-14491912
  • TATTTATTA
  • TAGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTATGAAAAACCCCCTCCTGTTTGGGTAATTACAACCACCCCTCAACTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTAT                                    A          CC     C                A -CA            -AAATC         G   C      C   T       TA   -  ATC     TATTAT ----   A   TTATC   TTTGTACCAGTTTTATCCCATTCGAACTCCACATTTTGAAGCAAGATGATCATAATATGTGTTCT
       TAGGGTAAATTACAACCACCCCTGAGGTATGGTCAA TTATGAAAAA  CCCTC TGTTTGGGTAATTACA C   CCCCTCAACTAT      TTCTTACAT TCC CCCTTG GGT TCAAATT  GTG GA   TTCGA      A    TGG ATA     ACT                                                                 
       |||||||||||||||||||||||||||||||||||| ||||||||||  ||||| |||||||||||||||| |   ||||||||||||      ||||||||| ||| |||||| ||| |||||||  ||| ||   |||||      |    ||| |||     |||                                                                 T
       ATCCCATTTAATGTTGGTGGGGACTCCATACCAGTT AATGCTTTTT  GGGAG ACAAACCTATTAATGT G   GGGGAGTTGATA      AAGAATGTG AGG GGGAAT CCA AGTTTAA  GTT TA   TTAGT      A    TAC ACG     AGA                                                                 
ATTATTT                                    A          TT     A                A ATG            CTAAAA         G   T      A   C       --   G  ---     ------ ACCT   -   -----   TCAAACATGAGCAAAACACATTTTTATGTCAAAGACTACGTGGTGTTAGACTATATATGTTCGGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End