Plant MITE

SE3550513

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6731
Mimulus guttatus
SE3550513
PIF/harbinger
To8
scaffold_14:20621705-20622050
TAA
AGAGGGTGTTTGGCTAAGCTTATAAGATG

Secondary structure and sequence

TSD TIR

5'

3'

TA                       --A     TTAAAAGT     ---------             -     T       CTTCCAA   -  TTGGTAATTTTTTAGAAAAAGATCTTAATTATTTTTAAAATAAGCTGTTGGAGAGCAAATAAGATCTTTTAAAATAAGTACCTCTA
  AGAGGGTGTTTGGCTAAGCTTAT   AGATG        AGCTT         ATAAGATGTTTTA GAGCT ATAAGCT       AGT GT                                                                                      
  |||||||||||||||||||||||   |||||        |||||         ||||||||||||| ||||| |||||||       ||| ||                                                                                       
  TCTCCCACAAACCGATTCGAATA   TTTGT        TCGAG         TATTCTACAAAAT CTCGA TATTCGA       TAG AT                                                                                      
AA                       AAA     -TGACTAT     AATGCAGAC             T     C       --CAATG   A  AAAAATCCTAATTAAAAATCTCACAAACCTATTACTCGAATAAAGGATAAAAATGAGTAATTTTCTAGAATTTATTTTTCCACCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550513

TAAGAGGGTGTTTGGCTAAGCTTATAAGATGTTAAAAGTAGCTTATAAGATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGGTAATTTTTTAGAAAAAGATCTTAATTATTTTTAAAATAAGCTGTTGGAGAGCAAATAAGATCTTTTAAAATAAGTACCTCTACCCCACCTTTTTATTTAAGATCTTTTAATGAGTAAAAATAGGAAATAAGCTCATTATCCAAACACTCTAAAAATTAATCCTAAAAATAAGATGTAACAGCTTATCAGCTCTTAAAACATCTTATCAGACGTAAGAGCTTATCAGTTGTTTAAAATAAGCTTAGCCAAACACCCTCTAA

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