SE3550514

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6732
  • Mimulus guttatus
  • SE3550514
  • PIF/harbinger
  • To2
  • scaffold_14:308598-308837
  • TAA
  • AGGCCTCGTTTGGTTGGGGAGATTAGCCATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----GG           T   -TAAC         GGACTTTGTTTGAT        TCCCCAATAACTTGCCGGATCGACCCGCAAATATTATGTTATCACGCCTTA
  AGGCCTCGTTTGGTTG       GAGATTAGCCA GAT     TAAATAATG              GTTTGGTA                                                   
  ||||||||||||||||       ||||||||||| |||     |||||||||              ||||||||                                                    
  TCCGGAGCAAACCAAC       TTCTAATCGGT CTA     ATTTATTAC              TTGGGTTA                                                   
AA                GGTTCTA           T   TTTTA         --------ATTACT        ATATAATAACTTGGAACCTTCTATTTTTTTTTTGTACGGATTTTTCGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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