SE3520515

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6733
  • Mimulus guttatus
  • SE3520515
  • Mutator
  • M9
  • scaffold_13:15657198-15657533
  • TATCACTAA
  • GGGAAAATTACAATTTCCGTCCCTTAAGTTTGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TATCACTAAC         A  A   C                 AAAAAATATT      A   CA      CAT            T       AA     TCAA        A     A  A    C    A    T        G  AA   AATCATGT   TGC
          GGGAAAATT CA TTT CGTCCCTTAAGTTTGCA          CATTTG TCC  TATGTT   AAAAAACACATT GGTCCCT  TGTTT    AATTTAAC TTTTT GT ATTT TGTC ATTT CCGTTAGT CT  CGG        GTG   
          ||||||||| || ||| |||||||||||||||||          |||||| |||  ||||||   |||||||||||| |||||||  |||||    |||||||| ||||| || |||| |||| |||| |||||||| ||  |||        |||   T
          CCCTTTTAA GT AAA GTAGGGAGTTCAAACGT          GTAAAC AGG  ATACAA   TTTTTTGTGTAA CCAGGGA  ACAAA    TTAAATTG AAAAA CA TAAA GCAG TAAA GGTAATCA GA  GTC        CAC   
CAATCACTAT         C  C   A                 -AACTAAAGT      C   TA      TTT            T       GC     CTTA        -     C  G    A    C    T        G  -A   GATTTCTT   TGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End