SE3520516

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6734
  • Mimulus guttatus
  • SE3520516
  • Mutator
  • M3
  • scaffold_7:7172825-7173268
  • AAATATATA
  • ATATATAGGGTAAATTACACTCACACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTGGTATCGATAATTACACTTACCCCCCTGAAACGTAGTTAGAAACTCTAATGGGATAATGCATTGGATACATTATTCCGATAGGGTTCTAATGGACTATTAATTTCAGCTAGTGGTGGAGATAACATAGAGTTATGGGGAGTTATAGGG

Secondary structure and sequence

TSD    TIR
5'



3'
AA      -A                        A                 T                              T      C             G                             A     C                       AA      CT                T           GA   A     TGACA   CT
  ATATAT  GGGTAAATTACACTCACACCCCTG GGTATGCTTAAATAACT TAAGGTCCCTGTGGTATCGATAATTACACT ACCCCC TGAAACGTAGTTA AAACTCTAATGGGATAATGCATTGGATAC TTATT CGATAGGGTTCTAATGGACTATT  TTTCAG  AGTGGTGGAGATAACA AGAGTTATGGG  GTT TAGGG     TGG  
  ||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||  ||||||  |||||||||||||||| |||||||||||  ||| |||||     |||  C
  TATATA  CCCATTTAATGTGGGTGTGGGGAC CCATACGAATTTATTGA ATTCCAGGGACACCATAGCTATTAATGTGA TGGGGG ACTTTGCATCAAT TTTGAGATTACCCTATTACGTAACCTATG AATAA GCTATCTCAAGATTGCCTGATAA  AAAGTC  TCACCACCTCTGTTGT TCTCAATACCC  TAA ATTCT     ACC  
 A      AA                        A                 C                              C      A             A                             C     T                       CC      CT                T           AC   -     TTATA   CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End