SE3540519

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6737
  • Mimulus guttatus
  • SE3540519
  • CACTA
  • Ca1
  • scaffold_6:18633619-18633912
  • AGC
  • GCCACTAGTAGAAAAATGGCTTTTTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
A  -             ATG    T         TCATTAACC            ATCAAATTCGTACTAAAAAGCTTTTTGCTACGCATTTGCTACGAATTTGCCCCGTAGCATATACGGGCGTGACAAAAGCTTTGCTACGGTAAATG
 GC CACTAGTAGAAAA   GCTT TTACTACGA         GTAGCAAAAGGT                                                                                               
 || |||||||||||||   |||| |||||||||         ||||||||||||                                                                                                
 CG GTGATCATCTTTT   CGAA AATGATGCT         AAACGATGTCAT                                                                                               
   A             AAA    T         ----TAAAA            TTTTTGGCAATATTTTCCATAAAAAATGATGCCTTGTTAAAACTTCAACATCATTTATGATCCTAAATGGCATCGTTTTTTCATAAACCATGCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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