SE3550520

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6738
  • Mimulus guttatus
  • SE3550520
  • PIF/harbinger
  • To7
  • scaffold_11:9372280-9372648
  • TTA
  • AGAGCAACTCCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -GAGT       ------C     ATTCAAACCATTAACCACTATTTATACACCAAAAAATAGAAATTTTTAACTCCAATGGGGTTATCTAATTAGAGTTCTATTTTGATAATTCAACTTTTGGGATGTAAAAGTACTTGCTGAAAATTGAGTTATAAAAAGTGTAATTAT
  AGAGCAACTCCAATG     TATCAAA       ATGGT                                                                                                                                                   
  |||||||||||||||     |||||||       |||||                                                                                                                                                    
  TCTCGTTGAGGTTAT     ATGGTTT       ATAGT                                                                                                                                                   
AT               AATTT       TAACTTA     TTATAAATAAACTATAAACTCTATTATTAAATTATAACTAATTTTAAATAGATGACGTTGGTACCAATAGTTTAATTAATAGTTAACCTTCAAGTACCCTAAAATAAAAACATTAACGGTGTACAGGTGAAAACTAATCTACAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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