Plant MITE

SE3520521

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6739
Mimulus guttatus
SE3520521
Mutator
M9
scaffold_10:4899217-4899549
TAGCAAGAA
GGGAAAATTACAATTTTCATCCTCAAGTTTGTATTGATTTCATATTCAGTCTTTCATGTTCACAAAAAAATGCATTTGATCCCTCATGTTCCAATAATTTAACACTTTTGGTTATTTCTGTCAATTTACCGTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TAGCAAGAAC       T    A     A    -    T    A             CA     T      CAC               A   CTC     C   T          T           C         A       ---TCCGTT        CA  CAT
          GGGAAAA TACA TTTTC TCCT CAAG TTGT TTGATTTCATATT  GTCTT CATGTT   AAAAAAATGCATTTG TCC   ATGTT CAA AATTTAACAC TTTGGTTATTT TGTCAATTT CCGTTAG         AGTTAAGC  GT   
          ||||||| |||| ||||| |||| |||| |||| |||||||||||||  ||||| ||||||   ||||||||||||||| |||   ||||| ||| |||||||||| ||||||||||| ||||||||| |||||||         ||||||||  ||    
          CCCTTTT ATGT AAAAG AGGA GTTC AACG GACTAAAGTGTAA  CAGGG GTACAA   TTTTTTTGTGTAAAC AGG   TACAA GTT TTAAGTTGTG AAATCAGTAAA GCAGTTAAA GGCAATT         TTAGTTCG  CA   
CAAGAACGAT       T    C     C    A    C    A             AC     -      --T               C   TAA     A   T          C           A         A       TTGATTACC        CA  AGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520521

TAGCAAGAACGGGAAAATTACAATTTTCATCCTCAAGTTTGTATTGATTTCATATTCAGTCTTTCATGTTCACAAAAAAATGCATTTGATCCCTCATGTTCCAATAATTTAACACTTTTGGTTATTTCTGTCAATTTACCGTTAGTCCGTTAGTTAAGCCAGTCATGGAACACGCTTGATTCCATTAGTTTTAACGGAAAATTGACGAAAATGACTAAACGTGTTGAATTTTTGAAACATAATGGACCAAATGTGTTTTTTTTAACATGGGGACCAAATGTGAAATCAGAGCAACCTTGAAGGACGAAAACTGTATTTTTCCCTAGCAAGAAC

Copy Cancel