SE3550522

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6740
  • Mimulus guttatus
  • SE3550522
  • PIF/harbinger
  • To2
  • scaffold_3:13719833-13720055
  • TAA
  • AGGCCTCGTTTGGTTGCCAAGATAAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C      A    TAAATAA  TAATGAAACTCAATTGTATTATTGGACCTTGGAAGGTCCAATAAAAAACATGCCTAGAAGGAAAGATAAGCCATGA
  AGGCCTCGTTTGGTTG CAAGAT AGAT       TC                                                                            
  |||||||||||||||| |||||| ||||       ||                                                                             
  TCCGGAGCAAACCAAC GTTCTA TCTG       TA                                                                            
AA                C      A    -------  ATAATTGATTTTATTAAAAACAAACTACAAACCATAGGGGTTATTGAACGGCCCAGCTGGGCGTTTATAATACAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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