SE3510525

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6743
  • Mimulus guttatus
  • SE3510525
  • Tc1/Mariner
  • St5
  • scaffold_7:10332918-10333185
  • TA
  • TACTCCCTCTGTCCCTTATTATATGTCTTTTTGGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
               TTA   T     --      GA  GTTTTTTTTGTCCCAAAT   T   CATTTT   GTT      ----T    --TT     C  TTTTATCAATTTTGCCCCTTATCACTCTTAATTAGTTAATTAAA
TACTCCCTCTGTCCC   TTA ATGTC  TTTTTG  GT                  TAT TGT      AGA   TCAATA     GGTA    AATTG AT                                            
|||||||||||||||   ||| |||||  ||||||  ||                  ||| |||      |||   ||||||     ||||    ||||| ||                                            A
ATGAGGGAGGCAGGG   AAT TACAG  AAAAAC  CA                  ATG GCA      TCT   AGTTAT     CATA    ATATG GT                                            
               TAA   T     CA      AC  ------------------   C   TCTAAT   ATC      TTATA    TCTA     -  TTTTATCGTATCATTTATGATTTTATGGGAACAATAATTAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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